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Levels of complexity within us

5/24/2016

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You would think that someone like me, with almost 20 years of laboratory research experience in different fields including microbiology and molecular biology, is by now quite used to the wonders of what happens inside our bodies and cells every day. And you would be wrong. I am still in awe every time I think about how I am walking around without something going visibly wrong somewhere in my body. The number of cells in our bodies (estimated at around a few trillion) each growing and dividing and doing tons of things every day that may or may not go well, is just amazing.  They do all this without visible mistakes in part because crucial steps of different cellular processes include specific and delicate error-checking mechanisms built within the system. In fact, it is sometimes when these mechanisms go wrong that we can get some diseases, including cancer.  We are even more complex than we thought in terms of whose cells we have inside us, we coexist with “foreign” cells that live as huge communities on and inside us (for more on this see my post on microbiomes).

But let’s just consider our own cells, going from the outside and macroscopic to the tiny microscopic stuff inside. We have a body we can all see and talk about, think about – external, visible things like hair and eyes and shapes and sizes. This body has organs inside, each performing specific and important functions: liver, kidneys, stomach, intestines, heart, lungs, glands, brain, etc. They consist of specialized cells that are different than those of other organs so they can do what they are supposed to do.

Some organs, including glands, “secrete” hormones that are signaling molecules that travel in our bloodstream and trigger specific responses once they reach the target cells/organ which have ”receptors” for them. Insulin, for example, is a hormone made by the pancreas- an organ. In fact, not all pancreas cells produce insulin but a subset of them (“beta” cells) in a specific region of the pancreas. Insulin is very important because it allows your body to use glucose (sugar) for energy or to store it for later use. After we eat and the glucose levels rise as a result of the breakdown of carbohydrates, insulin is released. Problems with insulin in our bodies lead to diabetes - the sugar remains in the blood and there is a rise of blood glucose levels.

We keep zooming in, and we go from organs that we can still see if there is an open body of a human or other animal species member in front of us, to cells. These are now microscopic- we can not see them with the naked eye, and need a microscope. Bacteria are also microscopic, as they are single-celled organisms, although they are a bit smaller than our cells because they lack a nucleus. Cells are surrounded by a membrane, which besides keeping cellular contents protected and at the right concentrations, has channels and receptors embedded within that allow specific substances or proteins to come in or go out of the cell. Inside cells there are different organelles often surrounded by their own membranes, each with specific functions. A very important organelle that gives us energy and has its own little DNA inside is the mitochondrion (for more info see my post on mitochondria).

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The nucleus of the cell is another organelle, which contains our DNA. DNA gets “transcribed” into specific RNAs for different genes in the nucleus of the cell. The so called messenger RNAs then “travel” to the cytoplasm of the cell by going through the nuclear membrane (in a process regulated at different levels) and once there they get translated into proteins (insulin for example) with the help of ribosomes. These proteins sometimes need additional modifications (addition of different molecules including methyl, acetate, phosphate, as well as carbohydrates or lipids) or they may be cleaved (cut into smaller portions), and then they are directed where they need to go- nucleus or other organelles, cell membrane, or they are exported as in the case of insulin. All these processes happen by direct action of other proteins (many of them enzymes) with specific activities. Each enzyme protein also came from a gene in the DNA that got transcribed into a specific RNA which in turn got translated into that particular enzyme.

Now let’s stop for a minute and consider that all cells in our bodies contain the SAME exact DNA, which in turn holds sequences for the same genes. Genes in each cell include those that when “expressed” will allow a specific organ to be such organ as well as genes that should NOT be expressed in the same organ (or should be “silent”). This gene regulation is accomplished via numerous tightly regulated events at a molecular level that include some “epigenetics” and modifications of proteins that are involved in tightly wrapping the DNA (histones) and specific “tags” on both DNA and histones which not only vary between different cells but that now studies show they can be inherited not only from our parents but even from grandparents (see my homepage for more on this).  Expression or silencing of a particular gene requires specific proteins (including “transcription factors”) whose expression is in turn also regulated. There are many cases of “feedback loop” in which amazing mechanisms sense whether or not there is sufficient amount of a certain required protein in the cell. Absence, presence, or an excess of the protein will result in the appropriate response (make more, less or none of this protein, respectively).

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These are some of the things that most cells do every day:
  1. Divide into 2 cells (by “mitosis”) which involves growing everything and then splitting contents, including cell membrane, nuclear membrane and nuclear DNA
  2. Import and export things to regulate inner contents, pH, salt concentration, food, etc
  3. Produce energy (mitochondria)
  4. Transcribe DNA into RNA, translate RNA into proteins
  5. Transport, degrade, import or export proteins

Some cells differ from others as they perform specialized functions. For example, red blood cells lack a nucleus and contain hemoglobin (which gives them a red color) in which they transport oxygen, nerve cells are long and branched into axons to transmit electrical impulses and muscle cells are elongated.
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Some cells die by a regulated process called apoptosis (from Greek, meaning the falling off such as leaves from a tree) or "programmed cell death" in which they basically commit suicide. In humans, billions of cells die by apoptosis in the bone marrow and intestine every hour. Cells that are damaged beyond repair undergo apoptosis, which is different to necrosis, in which a cell swells up and triggers an inflammation response. In apoptosis, the cell fragments into smaller pieces called "apoptotic bodies" which are engulfed by specialized cells (macrophages) and destroyed. Apoptosis occurs normally during development, aging, to maintain cell numbers under controlled, or when cells are damaged by disease or toxic agents. Irradiation or chemotherapy can result in DNA damage in some cells, which can lead to apoptosis.

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          By Spencer Katz (http://www.yalescientific.org/2010/09/cartoon-apoptosis/)


As at the end of a yoga class, when you thank your body for the practice, I think we should thank every day the humongous number of cells in our bodies for all they do for us, constantly... which includes, sometimes, killing themselves to preserve our well being.
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    Hi! This is an attempt to write simply about things I feel passionate about. My name is Judith Recht and I am a scientist by training, a later-in-life mother, and an expat in Bangkok, Thailand and Recife, Brazil (~4 years in each country) now back in the US. I was born in one country (USA) grew up in another (Venezuela) raised by Argentine parents and moved around four more times (NYC to Bangkok to Recife to Maryland). This blog is for those of you who might be interested in the diverse topics so far included and others coming up soon.

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